INFO: Using directory: "1" INFO: Using existing c-file: ./Airport_scannerII.c INFO: Using existing binary: ./Airport_scannerII.out WARNING: Ignoring invalid parameter: "Airport_scannerII.instr" INFO: === INFO: Using system default number of mpirun -np processes -------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: n-62-29-29 Local adapter: mlx4_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: n-62-29-29 Local device: mlx4_0 -------------------------------------------------------------------------- Simulation 'Airp_scannerII' (/zhome/89/0/38697/xTESTS/2022-04-01/McXtrace_CPU_MPICC_KISS_5e7/Airport_scannerII/Airport_scannerII.instr): running on 10 nodes (master is 'n-62-29-17', MPI version 3.1). [Airp_scannerII] Initialize [Airp_scannerII] Initialize Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/book.txt' (Table_Read_Offset) [Airp_scannerII] Initialize Loading geometry file (OFF/PLY): book.ply Number of vertices: 2853 Number of polygons: 5722 Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry book.ply will be applied! Bounding box dimensions for geometry book.ply: Length=0.239599 (100.000%) Width= 0.029804 (100.000%) Depth= 0.164529 (100.000%) sample_scan: Volume[1], material='book.txt' geometry='book.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/h2o2.dat' (Table_Read_Offset) Loading geometry file (OFF/PLY): h2o2.ply Number of vertices: 406 Number of polygons: 808 Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry h2o2.ply will be applied! Bounding box dimensions for geometry h2o2.ply: Length=0.126295 (100.000%) Width= 0.046911 (100.000%) Depth= 0.090087 (100.000%) sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' [Airp_scannerII] Initialize Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/H2O.txt' (Table_Read_Offset) Loading geometry file (OFF/PLY): water.ply sample_scan: Volume[1], material='book.txt' geometry='book.ply' Number of vertices: 818 sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' Number of polygons: 1632 Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry water.ply will be applied! Bounding box dimensions for geometry water.ply: Length=0.066238 (100.000%) Width= 0.058313 (100.000%) Depth= 0.217547 (100.000%) sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/ethanol.txt' (Table_Read_Offset) Loading geometry file (OFF/PLY): whiskey.ply sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' Number of vertices: 616 Number of polygons: 1228 Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry whiskey.ply will be applied! Bounding box dimensions for geometry whiskey.ply: Length=0.082601 (100.000%) Width= 0.076881 (100.000%) Depth= 0.141927 (100.000%) sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Cu.txt' (Table_Read_Offset) sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' [Airp_scannerII] Initialize Loading geometry file (OFF/PLY): wire.ply sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' Number of vertices: 2584 sample_scan: Volume[1], material='book.txt' geometry='book.ply' [Airp_scannerII] Initialize Number of polygons: 5438 sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry wire.ply will be applied! Bounding box dimensions for geometry wire.ply: Length=0.173456 (100.000%) Width= 0.078031 (100.000%) Depth= 0.145752 (100.000%) sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Al.txt' (Table_Read_Offset) sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' Loading geometry file (OFF/PLY): luggage.off sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' Number of vertices: 37707 [Airp_scannerII] Initialize sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' [Airp_scannerII] Initialize sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' [Airp_scannerII] Initialize sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' [Airp_scannerII] Initialize sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' Number of polygons: 84521 sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry luggage.off will be applied! Bounding box dimensions for geometry luggage.off: Length=0.324186 (100.000%) Width= 0.260044 (100.000%) Depth= 0.540097 (100.000%) sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' [n-62-29-17:23663] 9 more processes have sent help message help-mpi-btl-openib.txt / ib port not selected [n-62-29-17:23663] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages [n-62-29-17:23663] 9 more processes have sent help message help-mpi-btl-openib.txt / error in device init Trace ETA 2.1825 [h] % 0 Trace ETA 2.1825 [h] % 0 Trace ETA 1.90972 [h] % 0 Trace ETA 1.90972 [h] % 0 Trace ETA 2.1825 [h] % 0 Trace ETA 2.08333 [h] % 0 Trace ETA 2.08333 [h] % 0 Trace ETA 3.33333 [h] % 0 Trace ETA 2.38083 [h] % 0 Trace ETA 2.38083 [h] % 0 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 2 3 3 3 4 4 4 4 4 4 4 3 4 4 5 5 5 5 5 5 5 4 6 5 6 5 6 6 6 6 6 7 7 5 6 7 7 7 6 7 8 8 7 8 8 8 7 7 6 8 9 9 8 9 9 9 8 8 9 10 10 10 7 10 10 9 9 10 11 9 11 11 11 11 10 12 10 8 11 12 10 12 12 12 11 13 12 13 11 11 13 13 13 9 12 14 14 13 12 14 14 14 12 15 13 15 14 10 15 13 15 15 13 16 16 14 15 16 16 16 14 11 17 14 17 16 15 17 17 17 18 15 18 15 17 12 18 16 18 18 19 19 16 18 19 16 17 19 19 20 13 20 17 20 19 17 18 20 20 21 21 21 18 20 14 21 21 22 19 18 22 22 21 19 23 22 22 20 19 23 23 15 22 24 23 23 20 21 24 24 20 23 25 24 24 16 21 25 25 22 21 24 26 25 25 26 26 22 23 17 22 27 25 26 26 27 27 23 24 28 26 23 28 27 27 28 18 25 24 29 27 29 28 28 24 29 26 30 25 30 19 28 29 29 30 25 31 31 27 29 26 30 30 31 20 26 32 32 28 30 31 31 32 27 33 33 27 21 29 31 32 33 32 28 34 34 28 32 34 30 33 33 22 29 35 35 33 35 29 34 34 31 36 36 30 36 35 23 35 34 30 32 37 37 31 37 36 36 38 35 38 33 31 24 32 38 37 37 39 39 36 34 32 39 38 38 33 40 25 40 35 37 33 40 39 39 41 41 34 26 36 38 41 34 40 42 40 42 35 37 39 42 43 41 43 41 27 35 36 38 43 44 40 44 42 42 36 28 37 45 44 45 39 43 43 41 37 46 45 46 38 44 44 40 42 29 47 38 46 47 45 45 39 41 43 48 48 47 30 39 46 46 42 40 44 49 49 48 47 47 40 43 31 41 50 50 45 49 48 48 41 51 44 51 42 50 46 49 49 32 52 42 52 45 51 43 50 47 50 53 53 33 52 46 43 51 51 44 48 54 54 53 47 44 52 52 34 55 45 49 55 54 48 53 53 56 45 56 46 50 55 35 54 54 49 57 46 57 51 47 56 55 55 58 50 58 47 36 57 52 48 56 59 56 59 51 48 58 53 60 49 37 57 57 60 52 49 59 61 58 54 58 61 50 50 53 38 60 62 59 59 62 55 51 51 61 54 63 60 63 60 39 56 52 52 62 64 55 61 64 61 53 57 53 63 40 65 56 65 62 62 54 54 64 66 58 66 63 57 63 41 55 55 67 65 59 67 64 64 58 56 56 68 66 68 60 42 65 65 59 57 69 57 67 69 66 66 61 60 70 58 58 68 43 70 67 61 67 62 71 59 59 69 71 62 68 68 44 72 60 63 60 70 72 63 69 69 73 61 61 64 71 73 64 45 70 70 74 62 62 74 72 65 65 71 71 75 63 63 46 75 73 66 66 72 76 72 64 64 76 74 67 47 67 77 73 65 73 65 77 75 68 78 66 74 74 68 66 78 76 48 69 79 67 75 75 67 69 79 77 70 80 68 76 68 49 76 80 70 78 71 81 69 69 77 77 81 72 79 71 82 50 70 70 78 82 78 73 80 83 71 72 71 83 79 79 74 51 81 84 72 73 72 84 80 80 75 82 85 73 73 52 74 85 81 76 81 83 86 74 74 86 77 75 82 82 84 87 75 53 75 87 78 83 76 83 85 88 76 76 88 79 54 84 84 89 86 77 77 77 89 80 85 90 78 85 87 78 78 55 90 81 91 86 79 88 86 79 79 91 82 92 80 87 89 87 56 80 92 83 80 93 81 90 88 88 81 84 93 57 81 94 82 91 89 89 82 85 94 95 83 82 92 90 90 83 58 86 95 96 84 93 83 91 84 91 87 96 97 85 59 94 85 92 92 84 88 97 98 86 95 86 60 93 89 93 98 85 99 87 87 96 90 94 99 94 88 86 61 88 97 91 95 95 89 87 89 98 92 62 96 96 90 90 88 93 99 97 97 91 63 91 94 89 98 92 98 92 95 90 93 99 99 64 93 96 94 91 94 97 65 95 92 95 98 96 66 96 93 99 97 97 94 98 67 98 99 95 99 68 96 69 97 98 70 99 71 *** TRACE end *** 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 Save [Airp_scannerII] Detector: psd0_I=0.00103487 psd0_ERR=1.46354e-07 psd0_N=5e+07 "psd0.dat" Detector: emon_I=0.00103487 emon_ERR=1.46354e-07 emon_N=5e+07 "emon.dat" Detector: psd2_I=0.000643303 psd2_ERR=1.13545e-07 psd2_N=3.82656e+07 "psd2.dat" Finally [Airp_scannerII: 1]. Time: 3.12056 [h] Finally [Airp_scannerII: 1]. Time: 3.12056 [h] Finally [Airp_scannerII: 1]. Time: 3.12056 [h] Finally [Airp_scannerII: 1]. Time: 3.12056 [h] Finally [Airp_scannerII: 1]. Time: 3.12056 [h] Finally [Airp_scannerII: 1]. Time: 3.12056 [h] Finally [Airp_scannerII: 1]. Time: 3.12056 [h] Detector: psd_far_I=1.17632e-05 psd_far_ERR=1.44371e-08 psd_far_N=1.53234e+06 "psdfar.dat" Finally [Airp_scannerII: 1]. Time: 3.12056 [h] Finally [Airp_scannerII: 1]. Time: 3.12056 [h] Finally [Airp_scannerII: 1]. Time: 3.12056 [h] INFO: Placing instr file copy /zhome/89/0/38697/xTESTS/2022-04-01/McXtrace_CPU_MPICC_KISS_5e7/Airport_scannerII/Airport_scannerII.instr in dataset 1 loading system configuration loading override configuration from /zhome/89/0/38697/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace_CPU_MPICC_KISS/mccode_config.json