INFO: Using directory: "1" INFO: Using existing c-file: ./ESRF_ID01.c INFO: Using existing binary: ./ESRF_ID01.out WARNING: Ignoring invalid parameter: "ESRF_ID01.instr" INFO: === INFO: Using system default number of mpirun -np processes -------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: n-62-29-12 Local adapter: mlx4_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: n-62-29-12 Local device: mlx4_0 -------------------------------------------------------------------------- Simulation 'ESRF_ID01' (/zhome/89/0/38697/xTESTS/2022-03-01/McXtrace-1.x_CPU_MPICC_5e7/ESRF_ID01/ESRF_ID01.instr): running on 10 nodes (master is 'n-62-29-34', MPI version 3.1). Target wavelength is 1.5498 AA. The monochromators will be rotated by 14.3078 degrees. [ESRF_ID01] Initialize Target wavelength is 1.5498 AA. The monochromators will be rotated by 14.3078 degrees. [ESRF_ID01] Initialize Target wavelength is 1.5498 AA. The monochromators will be rotated by 14.3078 degrees. [ESRF_ID01] Initialize Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Si.txt' (Table_Read_Offset) Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/FormFactors.txt' (Table_Read_Offset) Target wavelength is 1.5498 AA. The monochromators will be rotated by 14.3078 degrees. [ESRF_ID01] Initialize Target wavelength is 1.5498 AA. The monochromators will be rotated by 14.3078 degrees. Target wavelength is 1.5498 AA. The monochromators will be rotated by 14.3078 degrees. [ESRF_ID01] Initialize [ESRF_ID01] Initialize Target wavelength is 1.5498 AA. The monochromators will be rotated by 14.3078 degrees. Target wavelength is 1.5498 AA. The monochromators will be rotated by 14.3078 degrees. [ESRF_ID01] Initialize [ESRF_ID01] Initialize Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/polycrystal_1layer_2orts.map' (Table_Read_Offset) Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/stretch_2orts.orts' (Table_Read_Offset) Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/GeReduced.lau' (Table_Read_Offset) mccompcurname: Rebinning MaterialDatafile data (Si.txt) for faster tracing. mccompcurname: Rebinning MaterialDatafile data (Si.txt) for faster tracing. mccompcurname: Rebinning MaterialDatafile data (Si.txt) for faster tracing. WARNING: (Table_Rebin): Rebinning table from Si.txt would exceed 1M rows. Skipping. Sample: 6 reflections found in GeReduced.lau. Sample: 2 different orientations found in stretch_2orts.orts. Sample: 441 voxels organised in a 21 by 21 by 1-grid found in polycrystal_1layer_2orts.map. Sample: The voxels of the polycrystals have dimensions of 9.52381e-06 m by 9.52381e-06 m by 5e-05 m. Sample: Volume of unit cell is 181.12 AA^3. WARNING: (Table_Rebin): Rebinning table from Si.txt would exceed 1M rows. Skipping. Sample: 6 reflections found in GeReduced.lau. Sample: 2 different orientations found in stretch_2orts.orts. Sample: 441 voxels organised in a 21 by 21 by 1-grid found in polycrystal_1layer_2orts.map. Sample: The voxels of the polycrystals have dimensions of 9.52381e-06 m by 9.52381e-06 m by 5e-05 m. Sample: Volume of unit cell is 181.12 AA^3. WARNING: (Table_Rebin): Rebinning table from Si.txt would exceed 1M rows. Skipping. Sample: 6 reflections found in GeReduced.lau. Sample: 2 different orientations found in stretch_2orts.orts. Sample: 441 voxels organised in a 21 by 21 by 1-grid found in polycrystal_1layer_2orts.map. Sample: The voxels of the polycrystals have dimensions of 9.52381e-06 m by 9.52381e-06 m by 5e-05 m. Sample: Volume of unit cell is 181.12 AA^3. Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/GeReduced.lau' (Table_Read_Offset) Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/GeReduced.lau' (Table_Read_Offset) WARNING: (Table_Rebin): Rebinning table from Si.txt would exceed 1M rows. Skipping. Sample: 6 reflections found in GeReduced.lau. Sample: 2 different orientations found in stretch_2orts.orts. Sample: 441 voxels organised in a 21 by 21 by 1-grid found in polycrystal_1layer_2orts.map. mccompcurname: Rebinning MaterialDatafile data (Si.txt) for faster tracing. mccompcurname: Rebinning MaterialDatafile data (Si.txt) for faster tracing. Sample: The voxels of the polycrystals have dimensions of 9.52381e-06 m by 9.52381e-06 m by 5e-05 m. Sample: Volume of unit cell is 181.12 AA^3. WARNING: (Table_Rebin): Rebinning table from Si.txt would exceed 1M rows. Skipping. Sample: 6 reflections found in GeReduced.lau. Sample: 2 different orientations found in stretch_2orts.orts. Sample: 441 voxels organised in a 21 by 21 by 1-grid found in polycrystal_1layer_2orts.map. Sample: The voxels of the polycrystals have dimensions of 9.52381e-06 m by 9.52381e-06 m by 5e-05 m. Sample: Volume of unit cell is 181.12 AA^3. Target wavelength is 1.5498 AA. The monochromators will be rotated by 14.3078 degrees. [ESRF_ID01] Initialize mccompcurname: Rebinning MaterialDatafile data (Si.txt) for faster tracing. WARNING: (Table_Rebin): Rebinning table from Si.txt would exceed 1M rows. Skipping. Sample: 6 reflections found in GeReduced.lau. Sample: 2 different orientations found in stretch_2orts.orts. Sample: 441 voxels organised in a 21 by 21 by 1-grid found in polycrystal_1layer_2orts.map. Sample: The voxels of the polycrystals have dimensions of 9.52381e-06 m by 9.52381e-06 m by 5e-05 m. Sample: Volume of unit cell is 181.12 AA^3. mccompcurname: Rebinning MaterialDatafile data (Si.txt) for faster tracing. mccompcurname: Rebinning MaterialDatafile data (Si.txt) for faster tracing. WARNING: (Table_Rebin): Rebinning table from Si.txt would exceed 1M rows. Skipping. Sample: 6 reflections found in GeReduced.lau. Sample: 2 different orientations found in stretch_2orts.orts. Sample: 441 voxels organised in a 21 by 21 by 1-grid found in polycrystal_1layer_2orts.map. Sample: The voxels of the polycrystals have dimensions of 9.52381e-06 m by 9.52381e-06 m by 5e-05 m. Sample: Volume of unit cell is 181.12 AA^3. WARNING: (Table_Rebin): Rebinning table from Si.txt would exceed 1M rows. Skipping. Sample: 6 reflections found in GeReduced.lau. Sample: 2 different orientations found in stretch_2orts.orts. Sample: 441 voxels organised in a 21 by 21 by 1-grid found in polycrystal_1layer_2orts.map. Sample: The voxels of the polycrystals have dimensions of 9.52381e-06 m by 9.52381e-06 m by 5e-05 m. Sample: Volume of unit cell is 181.12 AA^3. Target wavelength is 1.5498 AA. The monochromators will be rotated by 14.3078 degrees. [ESRF_ID01] Initialize mccompcurname: Rebinning MaterialDatafile data (Si.txt) for faster tracing. WARNING: (Table_Rebin): Rebinning table from Si.txt would exceed 1M rows. Skipping. Sample: 6 reflections found in GeReduced.lau. Sample: 2 different orientations found in stretch_2orts.orts. Sample: 441 voxels organised in a 21 by 21 by 1-grid found in polycrystal_1layer_2orts.map. Sample: The voxels of the polycrystals have dimensions of 9.52381e-06 m by 9.52381e-06 m by 5e-05 m. Sample: Volume of unit cell is 181.12 AA^3. mccompcurname: Rebinning MaterialDatafile data (Si.txt) for faster tracing. WARNING: (Table_Rebin): Rebinning table from Si.txt would exceed 1M rows. Skipping. Sample: 6 reflections found in GeReduced.lau. Sample: 2 different orientations found in stretch_2orts.orts. Sample: 441 voxels organised in a 21 by 21 by 1-grid found in polycrystal_1layer_2orts.map. Sample: The voxels of the polycrystals have dimensions of 9.52381e-06 m by 9.52381e-06 m by 5e-05 m. Sample: Volume of unit cell is 181.12 AA^3. [n-62-29-34:14033] 9 more processes have sent help message help-mpi-btl-openib.txt / ib port not selected [n-62-29-34:14033] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages [n-62-29-34:14033] 9 more processes have sent help message help-mpi-btl-openib.txt / error in device init Trace ETA 18 [s] % 59 Trace ETA 18 [s] % 58 Trace ETA 18 [s] % 60 Trace ETA 18 [s] % 60 Trace ETA 17 [s] % 61 Trace ETA 19 [s] % 57 Trace ETA 20 [s] % 53 Trace ETA 18 [s] % 60 Trace ETA 18 [s] % 60 Trace ETA 19 [s] % 57 70 70 71 70 67 67 70 69 63 68 80 80 81 80 80 79 77 78 77 73 91 90 90 90 90 89 88 87 87 83 Finally [ESRF_ID01: 1]. Time: 18 [s] 99 98 Finally [ESRF_ID01: 1]. Time: 18 [s] 97 97 Finally [ESRF_ID01: 1]. Time: 18 [s] Finally [ESRF_ID01: 1]. Time: 18 [s] Finally [ESRF_ID01: 1]. Time: 18 [s] 93 Save [ESRF_ID01] Detector: DivergenceMonitor_I=3.39134e-05 DivergenceMonitor_ERR=8.99838e-08 DivergenceMonitor_N=2.55384e+06 "DivMonitor.dat" Detector: EnergyMonitor_I=3.39134e-05 EnergyMonitor_ERR=8.99838e-08 EnergyMonitor_N=2.55384e+06 "EnergyMonitor.dat" Detector: PSDMonitor_I=3.39134e-05 PSDMonitor_ERR=8.99838e-08 PSDMonitor_N=2.55384e+06 "PSDMonitor.dat" Finally [ESRF_ID01: 1]. Time: 20 [s] Finally [ESRF_ID01: 1]. Time: 20 [s] Finally [ESRF_ID01: 1]. Time: 20 [s] Detector: MAXIPix_I=3.39134e-05 MAXIPix_ERR=8.99838e-08 MAXIPix_N=2.55384e+06 "DetectorMaxiPix.mcp" Finally [ESRF_ID01: 1]. Time: 20 [s] Finally [ESRF_ID01: 1]. Time: 20 [s] INFO: Placing instr file copy /zhome/89/0/38697/xTESTS/2022-03-01/McXtrace-1.x_CPU_MPICC_5e7/ESRF_ID01/ESRF_ID01.instr in dataset 1 loading system configuration loading override configuration from /zhome/89/0/38697/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace-1.x_CPU_MPICC/mccode_config.json