INFO: No output directory specified (--dir) INFO: Using directory: "TestSAXS_20220106_003149" INFO: Regenerating c-file: TestSAXS.c DEBUG: CMD: mcxtrace -t -o ./TestSAXS.c /zhome/7c/9/7041/TESTS/2022-01-06/McXtrace-3.0_CPU_gcc_MPI_1e7/TestSAXS/TestSAXS.instr Info: 'SAXSSpheres' is a contributed component. Info: 'SAXSShells' is a contributed component. Info: 'SAXSCylinders' is a contributed component. Info: 'SAXSEllipticCylinders' is a contributed component. Info: 'SAXSLiposomes' is a contributed component. Info: 'SAXSNanodiscs' is a contributed component. Info: 'SAXSNanodiscsWithTags' is a contributed component. Info: 'SAXSPDB' is a contributed component. Info: 'SAXSCurve' is a contributed component. Info: 'SAXSNanodiscsFast' is a contributed component. Info: 'SAXSNanodiscsWithTagsFast' is a contributed component. Info: 'SAXSPDBFast' is a contributed component. Info: 'SAXSQMonitor' is a contributed component. CFLAGS= -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL ----------------------------------------------------------- Generating single GPU kernel or single CPU section layout: ----------------------------------------------------------- Generating GPU/CPU -DFUNNEL layout: Component Sample2 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> CPU section from component Sample2 Component Sample3 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> GPU kernel from component Sample4 Component Sample5 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> CPU section from component Sample5 Component Sample6 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. Component Sample7 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> GPU kernel from component Sample8 Component Sample9 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> CPU section from component Sample9 Component Sample10 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. Component Sample11 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> GPU kernel from component Beamstop ----------------------------------------------------------- INFO: Recompiling: ./TestSAXS.out DEBUG: CMD: mpicc -o ./TestSAXS.out ./TestSAXS.c -lm -std=c99 -g -lm -O2 -DUSE_MPI -lmpi -I/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL ./TestSAXS.c: In function ‘sighandler’: ./TestSAXS.c:5384:5: warning: implicit declaration of function ‘kill’ [-Wimplicit-function-declaration] kill(0, SIGKILL); /* kill myself if error occurs within sighandler: loops */ ^ INFO: === loading system configuration loading override configuration from /zhome/7c/9/7041/McXtrace/mcxtrace/1.5/tools/Python/mctest/../mccodelib/mcxtrace-test/McXtrace-3.0_CPU_gcc_MPI/mccode_config.json