INFO: No output directory specified (--dir) INFO: Using directory: "TestSAXS_20220106_003339" INFO: Regenerating c-file: TestSAXS.c DEBUG: CMD: mcxtrace -t -o ./TestSAXS.c /zhome/7c/9/7041/TESTS/2022-01-06/McXtrace-3.0_CPU_PGCC_MC_1e7/TestSAXS/TestSAXS.instr Info: 'SAXSSpheres' is a contributed component. Info: 'SAXSShells' is a contributed component. Info: 'SAXSCylinders' is a contributed component. Info: 'SAXSEllipticCylinders' is a contributed component. Info: 'SAXSLiposomes' is a contributed component. Info: 'SAXSNanodiscs' is a contributed component. Info: 'SAXSNanodiscsWithTags' is a contributed component. Info: 'SAXSPDB' is a contributed component. Info: 'SAXSCurve' is a contributed component. Info: 'SAXSNanodiscsFast' is a contributed component. Info: 'SAXSNanodiscsWithTagsFast' is a contributed component. Info: 'SAXSPDBFast' is a contributed component. Info: 'SAXSQMonitor' is a contributed component. CFLAGS= -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL ----------------------------------------------------------- Generating single GPU kernel or single CPU section layout: ----------------------------------------------------------- Generating GPU/CPU -DFUNNEL layout: Component Sample2 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> CPU section from component Sample2 Component Sample3 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> GPU kernel from component Sample4 Component Sample5 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> CPU section from component Sample5 Component Sample6 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. Component Sample7 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> GPU kernel from component Sample8 Component Sample9 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> CPU section from component Sample9 Component Sample10 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. Component Sample11 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> GPU kernel from component Beamstop ----------------------------------------------------------- INFO: Recompiling: ./TestSAXS.out DEBUG: CMD: nvc -o ./TestSAXS.out ./TestSAXS.c -lm -lm -O2 -acc=multicore -DOPENACC -I/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/7c/9/7041/McXtrace/mcxtrace/3.0-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL "./TestSAXS.c", line 4116: warning: variable "randstate" was declared but never referenced unsigned long randstate[7]; ^ "./TestSAXS.c", line 4035: warning: variable "newlen" was declared but never referenced long newlen = 0; ^ "./TestSAXS.c", line 4879: warning: pointless comparison of unsigned integer with zero state[4] = t < 0; ^ "./TestSAXS.c", line 5786: warning: variable "ret" was declared but never referenced int ret=1,stat=0,plane_stat=0; ^ "./TestSAXS.c", line 5959: warning: variable "D" was declared but never referenced double A,B,C,D,k; ^ "./TestSAXS.c", line 8024: warning: variable "DummyChar" was declared but never referenced char DummyChar; ^ "./TestSAXS.c", line 8025: warning: variable "Atom" was declared but never referenced char Atom; ^ "./TestSAXS.c", line 8091: warning: variable "Line" was declared but never referenced char Line[256]; ^ "./TestSAXS.c", line 8105: warning: variable "AD" was declared but never referenced const double AD = 1 * 2.82e-13; ^ "./TestSAXS.c", line 9778: warning: variable "tc2" was declared but never referenced Coords tc1, tc2; ^ "./TestSAXS.c", line 9779: warning: variable "tr1" was declared but never referenced Rotation tr1; ^ "./TestSAXS.c", line 10804: warning: variable "status" was set but never used int status=0; ^ "./TestSAXS.c", line 11473: warning: variable "j" was declared but never referenced int i,j; ^ "./TestSAXS.c", line 12006: warning: variable "i" was declared but never referenced int i,j; ^ "./TestSAXS.c", line 12006: warning: variable "j" was declared but never referenced int i,j; ^ "./TestSAXS.c", line 12007: warning: variable "p1" was declared but never referenced double *p1,*p2,*p3; ^ "./TestSAXS.c", line 12007: warning: variable "p2" was declared but never referenced double *p1,*p2,*p3; ^ "./TestSAXS.c", line 12007: warning: variable "p3" was declared but never referenced double *p1,*p2,*p3; ^ "./TestSAXS.c", line 12524: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 12638: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 12754: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 12881: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 13038: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 13191: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 13193: warning: variable "Weight" was declared but never referenced double Weight; ^ "./TestSAXS.c", line 13194: warning: variable "IntensityPart" was declared but never referenced double IntensityPart; ^ "./TestSAXS.c", line 13351: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 13353: warning: variable "Weight" was declared but never referenced double Weight; ^ "./TestSAXS.c", line 13354: warning: variable "IntensityPart" was declared but never referenced double IntensityPart; ^ "./TestSAXS.c", line 13493: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 13496: warning: variable "Weight" was declared but never referenced double Weight; ^ "./TestSAXS.c", line 13497: warning: variable "IntensityPart" was declared but never referenced double IntensityPart; ^ "./TestSAXS.c", line 13508: warning: variable "Slope" was declared but never referenced double Slope; ^ "./TestSAXS.c", line 13509: warning: variable "Offset" was declared but never referenced double Offset; ^ "./TestSAXS.c", line 13619: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 13621: warning: variable "Weight" was declared but never referenced double Weight; ^ "./TestSAXS.c", line 13622: warning: variable "IntensityPart" was declared but never referenced double IntensityPart; ^ "./TestSAXS.c", line 13782: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 13784: warning: variable "Weight" was declared but never referenced double Weight; ^ "./TestSAXS.c", line 13785: warning: variable "IntensityPart" was declared but never referenced double IntensityPart; ^ "./TestSAXS.c", line 13977: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 13979: warning: variable "Weight" was declared but never referenced double Weight; ^ "./TestSAXS.c", line 13980: warning: variable "IntensityPart" was declared but never referenced double IntensityPart; ^ "./TestSAXS.c", line 14146: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 14149: warning: variable "Weight" was declared but never referenced double Weight; ^ "./TestSAXS.c", line 14150: warning: variable "IntensityPart" was declared but never referenced double IntensityPart; ^ "./TestSAXS.c", line 14272: warning: variable "x0" is used before its value is set dl=sqrt((x-x0)*(x-x0)+(y-y0)*(y-y0)+(z-z0)*(z-z0)); ^ "./TestSAXS.c", line 14272: warning: variable "y0" is used before its value is set dl=sqrt((x-x0)*(x-x0)+(y-y0)*(y-y0)+(z-z0)*(z-z0)); ^ "./TestSAXS.c", line 14272: warning: variable "z0" is used before its value is set dl=sqrt((x-x0)*(x-x0)+(y-y0)*(y-y0)+(z-z0)*(z-z0)); ^ "./TestSAXS.c", line 14320: warning: variable "k" was declared but never referenced int i,j,k; ^ "./TestSAXS.c", line 14321: warning: variable "e" was declared but never referenced double e,p2; ^ "./TestSAXS.c", line 17010: warning: variable "t" is used before its value is set mcstartdate = (long)t; /* set start date before parsing options and creating sim file */ ^ "./TestSAXS.c", line 16950: warning: variable "ct" was declared but never referenced clock_t ct; ^ "./TestSAXS.c", line 1257: warning: variable "mcstartdate" was set but never used static long mcstartdate = 0; /* start simulation time */ ^ "./TestSAXS.c", line 2498: warning: function "strcpy_valid" was declared but never referenced static char *strcpy_valid(char *valid, char *original) ^ INFO: === loading system configuration loading override configuration from /zhome/7c/9/7041/McXtrace/mcxtrace/1.5/tools/Python/mctest/../mccodelib/mcxtrace-test/McXtrace-3.0_CPU_PGCC_MC/mccode_config.json