INFO: No output directory specified (--dir)
INFO: Using directory: "TestSAXS_20220106_003224"
INFO: Regenerating c-file: TestSAXS.c
DEBUG: CMD: mcxtrace -t -o ./TestSAXS.c /zhome/7c/9/7041/TESTS/2022-01-06/McXtrace-1.5_CPU_MPICC_1e7/TestSAXS/TestSAXS.instr
Info:    'SAXSSpheres' is a contributed component.
Info:    'SAXSShells' is a contributed component.
Info:    'SAXSCylinders' is a contributed component.
Info:    'SAXSEllipticCylinders' is a contributed component.
Info:    'SAXSLiposomes' is a contributed component.
Info:    'SAXSPDB' is a contributed component.
Info:    'SAXSNanodiscsFast' is a contributed component.
Info:    'SAXSPDBFast' is a contributed component.
Info:    'SAXSQMonitor' is a contributed component.
Warning: Component Origin=Progress_bar(string profile) definition parameter
         may be changed into a setting parameter to avoid
         warnings at compile time.
Warning: Component Source=Source_flat(string spectrum_file) definition parameter
         may be changed into a setting parameter to avoid
         warnings at compile time.
Warning: Component QMonitor=SAXSQMonitor(string RFilename) definition parameter
         may be changed into a setting parameter to avoid
         warnings at compile time.
Warning: Component QMonitor=SAXSQMonitor(string qFilename) definition parameter
         may be changed into a setting parameter to avoid
         warnings at compile time.
CFLAGS= -std=c99 -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas
  INFO: Recompiling: ./TestSAXS.out
DEBUG: CMD: mpicc -o ./TestSAXS.out ./TestSAXS.c -lm -DUSE_MPI -lmpi     -std=c99 -g -lm -O2 -DUSE_MPI -lmpi  -std=c99 -I/zhome/7c/9/7041/McXtrace/mcxtrace/1.5/tools/Python_3.0-dev/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/7c/9/7041/McXtrace/mcxtrace/1.5/tools/Python_3.0-dev/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -I/zhome/7c/9/7041/McXtrace/mcxtrace/1.5/tools/Python_3.0-dev/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/7c/9/7041/McXtrace/mcxtrace/1.5/tools/Python_3.0-dev/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas
mccode-r.c: In function ‘sighandler’:
mccode-r.c:3719:5: warning: implicit declaration of function ‘kill’ [-Wimplicit-function-declaration]
/zhome/7c/9/7041/McXtrace/mcxtrace/1.5/tools/Python_3.0-dev/mxrun/../mccodelib/../../../contrib/SAXSNanodiscsFast.comp: In function ‘NDF_FormfactorCylinder’:
/zhome/7c/9/7041/McXtrace/mcxtrace/1.5/tools/Python_3.0-dev/mxrun/../mccodelib/../../../contrib/SAXSNanodiscsFast.comp:83:3: warning: implicit declaration of function ‘j1’ [-Wimplicit-function-declaration]
   double const Formfactor1 = j1(q * ProjectedRadius * sin(Alpha)) / (q * ProjectedRadius * sin(Alpha));
   ^
INFO: ===
loading system configuration
loading override configuration from /zhome/7c/9/7041/McXtrace/mcxtrace/1.5/tools/Python/mctest/../mccodelib/mcxtrace-test/McXtrace-1.5_CPU_MPICC/mccode_config.json