INFO: Using directory: "3" INFO: Using existing c-file: ./Test_Absorption.c INFO: Using existing binary: ./Test_Absorption.out WARNING: Ignoring invalid parameter: "Test_Absorption.instr" INFO: === INFO: Using system default number of mpirun -np processes -------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: n-62-11-62 Local adapter: mlx5_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: n-62-11-62 Local device: mlx5_0 -------------------------------------------------------------------------- Simulation 'Test_Absorption' (/zhome/89/0/38697/xTESTS/2022-06-01/McXtrace_CPU_MPICC_KISS_5e7/Test_Absorption/Test_Absorption.instr): running on 10 nodes (master is 'n-62-11-62', MPI version 3.1). [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Mn.txt' (Table_Read_Offset) WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done Warning: sample_scan2: Invalid inner volume specification. Ignoring. Warning: sample_scan2: Invalid inner volume specification. Ignoring. Reusing input file 'Mn.txt' (Table_Read_Offset) INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt Warning: sample_scan2: Invalid inner volume specification. Ignoring. Warning: sample_scan2: Invalid inner volume specification. Ignoring. Reusing input file 'Mn.txt' (Table_Read_Offset) Loading geometry file (OFF/PLY): cube.off sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' Number of vertices: 8 Number of polygons: 6 Warning: Aspect ratio of the geometry cube.off was modified. If you want to keep the original proportions, specifiy only one of the dimensions. Bounding box dimensions for geometry cube.off: Length=0.001000 (0.100%) Width= 0.001000 (0.100%) Depth= 0.000100 (0.010%) sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' [n-62-11-62:05472] 9 more processes have sent help message help-mpi-btl-openib.txt / ib port not selected [n-62-11-62:05472] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages [n-62-11-62:05472] 9 more processes have sent help message help-mpi-btl-openib.txt / error in device init Trace ETA 56 [s] % 19 Trace ETA 48 [s] % 22 Trace ETA 44 [s] % 24 Trace ETA 43 [s] % 25 Trace ETA 46 [s] % 23 Trace ETA 43 [s] % 25 Trace ETA 46 [s] % 23 Trace ETA 43 [s] % 25 Trace ETA 47 [s] % 23 Trace ETA 50 [s] % 21 25 23 24 22 26 20 24 26 26 24 26 25 24 27 23 25 27 21 27 25 27 26 25 28 24 26 28 28 22 26 28 27 26 29 29 27 29 25 29 27 23 28 30 27 30 30 28 26 30 28 29 31 28 24 31 31 29 31 27 29 32 30 29 32 32 25 30 32 28 33 30 31 33 30 33 31 33 26 34 31 29 32 34 34 31 34 32 35 27 32 33 30 35 35 32 35 33 36 34 33 36 28 36 31 36 33 34 37 35 37 34 37 32 29 37 34 38 35 38 36 38 35 38 33 39 35 30 36 39 39 37 36 39 40 34 36 37 31 40 40 38 37 40 41 35 37 38 41 41 32 39 38 41 42 38 39 36 42 42 40 42 39 43 33 40 39 43 37 43 41 43 44 40 34 44 41 40 44 38 42 44 45 41 45 35 45 42 41 39 45 46 43 42 46 46 43 42 36 47 46 40 44 43 47 47 44 43 48 47 37 45 41 44 48 48 45 49 44 48 46 42 38 45 49 49 50 46 49 45 47 43 50 46 50 39 51 50 47 46 48 51 47 51 44 52 40 51 48 47 49 52 52 48 45 53 52 49 41 48 50 53 53 49 54 46 53 50 51 49 54 42 54 55 50 54 47 51 52 55 50 55 43 56 51 55 48 52 56 53 51 56 57 52 56 44 49 53 57 54 57 52 58 57 53 45 58 54 50 55 58 53 59 58 54 59 55 59 46 56 51 60 54 59 55 60 60 56 57 61 52 47 55 60 56 61 61 57 62 58 53 61 56 48 57 62 62 63 58 59 62 57 54 63 58 49 63 64 59 60 63 58 55 64 59 64 65 50 61 60 64 59 65 56 65 66 60 62 61 51 65 66 60 66 57 67 61 63 62 66 52 67 61 67 68 58 62 64 63 67 68 68 69 53 62 59 63 65 64 68 69 69 70 63 54 64 60 66 69 65 70 71 70 64 65 55 70 61 67 66 71 72 71 65 66 71 68 67 62 72 56 73 72 66 67 72 69 73 68 74 63 73 57 67 73 68 70 74 75 69 74 64 58 68 74 75 69 71 76 75 70 65 59 69 75 76 77 72 70 76 71 66 76 77 70 78 77 73 60 71 72 67 78 79 77 71 78 74 72 73 61 68 79 80 78 79 72 75 73 74 62 80 81 69 79 80 73 76 74 75 81 82 63 80 81 70 77 74 75 76 83 82 81 82 64 71 78 75 76 77 84 83 82 83 79 72 65 76 77 78 85 84 83 84 80 73 77 78 79 66 86 85 84 85 81 78 74 79 80 87 86 67 85 86 82 88 79 80 87 81 75 86 87 68 83 89 88 81 80 82 76 87 88 69 84 90 89 82 83 81 88 89 77 85 91 90 70 83 84 90 89 82 78 86 92 91 91 71 90 84 85 83 79 93 87 92 92 91 86 85 84 72 80 94 93 88 93 92 87 86 85 73 95 81 94 89 94 93 88 87 86 96 95 90 82 74 95 94 89 88 87 97 96 91 96 83 95 75 90 89 98 88 97 92 97 96 84 76 91 99 90 98 89 98 93 97 85 92 91 99 77 90 99 94 98 86 93 92 91 78 95 99 87 94 93 92 96 79 95 88 94 93 97 80 96 89 95 94 98 81 97 90 96 99 95 98 82 91 97 *** TRACE end *** 96 99 83 98 92 97 99 93 84 98 94 99 85 95 86 96 87 97 88 98 89 99 90 91 92 93 94 95 96 97 98 99 Save [Test_Absorption] Detector: emon_I=8.20777e-12 emon_ERR=5.86992e-15 emon_N=5.19957e+06 "emon.dat" Detector: psd_I=8.67444e-09 psd_ERR=1.85408e-12 psd_N=4.39423e+07 "psd.dat" Finally [Test_Absorption: 3]. Time: 52 [s] Finally [Test_Absorption: 3]. Time: 52 [s] Finally [Test_Absorption: 3]. Time: 52 [s] Finally [Test_Absorption: 3]. Time: 52 [s] Finally [Test_Absorption: 3]. Time: 52 [s] Finally [Test_Absorption: 3]. Time: 52 [s] Finally [Test_Absorption: 3]. Time: 52 [s] Finally [Test_Absorption: 3]. Time: 52 [s] Finally [Test_Absorption: 3]. Time: 52 [s] Finally [Test_Absorption: 3]. Time: 53 [s] INFO: Placing instr file copy /zhome/89/0/38697/xTESTS/2022-06-01/McXtrace_CPU_MPICC_KISS_5e7/Test_Absorption/Test_Absorption.instr in dataset 3 loading system configuration loading override configuration from /zhome/89/0/38697/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace_CPU_MPICC_KISS/mccode_config.json