INFO: Using directory: "3" INFO: Using existing c-file: ./Test_Absorption.c INFO: Using existing binary: ./Test_Absorption.out WARNING: Ignoring invalid parameter: "Test_Absorption.instr" INFO: === Simulation 'Test_Absorption' (/home/nexmap/pkwi/xTESTS/2022-06-01/McXtrace-1.x_CPU_MPICC_5e7/Test_Absorption/Test_Absorption.instr): running on 16 nodes (master is 'elearn1.fysik.dtu.dk', MPI version 3.1). [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Mn.txt' (Table_Read_Offset) sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' Loading geometry file (OFF/PLY): cube.off Number of vertices: 8 Number of polygons: 6 Warning: Aspect ratio of the geometry cube.off was modified. If you want to keep the original proportions, specifiy only one of the dimensions. Bounding box dimensions for geometry cube.off: Length=0.001000 (0.100%) Width= 0.001000 (0.100%) Depth= 0.000100 (0.010%) sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. Trace ETA 32 [s] % 34 Trace ETA 31 [s] % 35 Trace ETA 33 [s] % 32 Trace ETA 31 [s] % 34 Trace ETA 31 [s] % 34 Trace ETA 31 [s] % 34 Trace ETA 31 [s] % 35 Trace ETA 32 [s] % 34 Trace ETA 31 [s] % 34 Trace ETA 31 [s] % 34 Trace ETA 30 [s] % 35 Trace ETA 34 [s] % 32 Trace ETA 31 [s] % 34 Trace ETA 32 [s] % 33 Trace ETA 32 [s] % 33 Trace ETA 33 [s] % 32 36 36 36 35 35 35 35 35 35 35 35 34 34 33 33 33 37 37 37 36 36 36 36 36 36 36 36 35 35 34 34 34 38 38 38 37 37 37 37 37 37 37 37 36 36 35 35 35 39 39 39 38 38 38 38 38 38 38 38 37 37 36 36 36 40 40 40 39 39 39 39 39 39 39 39 38 38 37 37 37 41 41 41 40 40 40 40 40 40 40 40 39 39 38 38 38 42 42 42 41 41 41 41 41 41 41 41 40 40 39 39 39 43 43 43 42 42 42 42 42 42 42 42 41 41 40 40 40 44 44 44 43 43 43 43 43 43 43 43 42 42 41 41 41 45 45 45 44 44 44 44 44 44 44 44 43 43 42 42 46 46 46 42 45 45 45 45 45 45 45 45 44 44 43 47 43 47 47 46 43 46 46 46 46 46 46 46 45 45 44 48 48 48 44 47 47 44 47 47 47 47 47 47 46 46 49 45 49 49 48 45 48 48 48 48 48 45 48 48 47 47 50 50 46 50 49 49 46 49 49 49 49 49 46 49 48 48 51 51 51 47 50 50 50 47 50 50 50 50 47 50 49 49 52 52 52 51 48 51 51 51 51 51 48 51 51 48 50 50 53 53 53 52 49 52 52 52 52 52 52 49 52 49 51 51 54 54 54 53 53 50 53 53 53 53 53 50 53 52 52 50 55 55 55 54 54 51 54 54 54 54 54 51 54 53 56 53 51 56 56 55 55 55 55 52 55 55 55 52 55 57 54 54 57 52 57 56 56 56 56 56 56 53 56 56 53 58 55 55 58 58 53 57 57 57 57 57 57 54 57 57 59 54 56 56 59 59 58 54 58 58 58 58 58 58 55 60 58 55 60 57 57 60 59 59 55 59 59 59 59 59 56 61 59 61 58 61 58 56 60 60 56 60 60 60 60 60 57 62 60 62 62 59 59 57 61 61 61 57 61 61 61 61 63 58 61 63 63 60 60 62 58 62 62 62 62 62 58 62 64 59 62 64 64 61 61 63 63 59 63 63 63 63 59 63 65 65 60 63 65 62 64 62 64 60 64 64 64 64 66 64 60 66 64 66 61 65 63 63 65 61 65 65 65 65 67 65 61 67 67 65 62 66 64 64 66 66 62 66 66 66 68 66 68 62 68 66 63 67 65 65 67 67 67 63 67 67 69 67 69 69 63 67 68 64 66 68 66 68 68 68 68 70 64 68 70 70 68 64 69 65 69 67 67 69 69 71 69 69 65 69 71 71 69 70 65 70 66 68 68 70 72 70 70 70 70 66 72 72 70 71 71 66 67 69 69 71 73 71 71 71 71 73 67 73 71 72 72 67 70 68 70 72 74 72 72 72 72 74 74 68 73 72 73 71 71 69 68 75 73 73 73 73 75 73 75 69 74 73 74 72 72 76 70 74 69 74 74 74 76 74 76 70 75 74 75 77 73 73 75 71 75 70 75 75 77 75 77 76 71 75 76 78 74 74 76 76 72 76 76 71 78 78 76 77 72 76 77 79 75 77 75 77 77 77 73 79 72 79 77 78 78 77 73 80 76 78 76 78 78 78 74 80 80 73 78 79 79 78 81 74 79 77 77 79 79 79 81 75 81 79 74 80 80 79 82 75 80 78 80 78 80 80 82 82 76 80 75 81 81 80 83 76 81 79 81 79 81 81 83 83 77 81 82 76 82 84 81 82 77 80 82 84 80 82 82 84 82 78 83 83 77 85 82 83 78 83 81 85 83 83 81 85 83 79 84 84 86 78 83 84 84 86 82 84 79 84 82 86 84 85 80 85 87 84 79 85 87 85 83 85 85 87 83 80 85 86 81 88 86 85 80 86 88 86 86 86 84 88 84 81 86 87 82 89 87 86 81 87 89 87 87 87 89 85 85 82 87 88 90 88 83 87 88 90 82 88 90 88 88 86 86 83 88 89 91 89 84 88 91 89 89 91 89 83 89 87 87 90 89 84 92 90 85 89 92 90 90 92 90 90 84 88 88 91 90 93 85 91 86 90 93 91 91 93 91 91 89 85 89 92 91 94 92 86 87 94 91 92 94 92 92 92 90 90 86 93 95 92 93 87 88 95 92 93 95 93 93 93 91 94 91 96 87 93 94 88 96 89 93 94 96 94 94 94 92 95 97 92 94 88 95 89 97 90 94 95 97 95 95 95 93 96 98 93 95 96 89 98 90 95 96 91 98 96 96 96 99 97 94 94 96 97 90 99 91 97 96 99 92 97 97 97 98 95 95 97 98 91 98 92 97 93 98 98 98 99 Finally [Test_Absorption: 3]. Time: 30 [s] Finally [Test_Absorption: 3]. Time: 30 [s] 96 96 98 99 92 99 98 93 94 99 99 99 97 97 99 Finally [Test_Absorption: 3]. Time: 31 [s] Finally [Test_Absorption: 3]. Time: 31 [s] Finally [Test_Absorption: 3]. Time: 31 [s] Finally [Test_Absorption: 3]. Time: 31 [s] 93 99 94 95 98 98 94 Finally [Test_Absorption: 3]. Time: 31 [s] Finally [Test_Absorption: 3]. Time: 31 [s] 95 96 99 99 Finally [Test_Absorption: 3]. Time: 31 [s] 95 97 96 96 98 97 97 99 98 Finally [Test_Absorption: 3]. Time: 32 [s] 98 99 99 Save [Test_Absorption] Detector: emon_I=8.21774e-12 emon_ERR=5.8728e-15 emon_N=5.20462e+06 "emon.dat" Finally [Test_Absorption: 3]. Time: 33 [s] Finally [Test_Absorption: 3]. Time: 33 [s] Finally [Test_Absorption: 3]. Time: 33 [s] Finally [Test_Absorption: 3]. Time: 33 [s] Finally [Test_Absorption: 3]. Time: 33 [s] Detector: psd_I=8.67468e-09 psd_ERR=1.85411e-12 psd_N=4.39476e+07 "psd.dat" Finally [Test_Absorption: 3]. Time: 33 [s] INFO: Placing instr file copy /home/nexmap/pkwi/xTESTS/2022-06-01/McXtrace-1.x_CPU_MPICC_5e7/Test_Absorption/Test_Absorption.instr in dataset 3 loading system configuration loading override configuration from /home/nexmap/pkwi/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace-1.x_CPU_MPICC/mccode_config.json