INFO: Using directory: "1" INFO: Using existing c-file: ./Airport_scannerII.c INFO: Using existing binary: ./Airport_scannerII.out WARNING: Ignoring invalid parameter: "Airport_scannerII.instr" INFO: === INFO: Using system default number of mpirun -np processes -------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: n-62-29-36 Local adapter: mlx4_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: n-62-29-36 Local device: mlx4_0 -------------------------------------------------------------------------- Simulation 'Airp_scannerII' (/zhome/89/0/38697/xTESTS/2022-05-01/McXtrace_CPU_MPICC_KISS_5e7/Airport_scannerII/Airport_scannerII.instr): running on 10 nodes (master is 'n-62-29-14', MPI version 3.1). [Airp_scannerII] Initialize [Airp_scannerII] Initialize Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/book.txt' (Table_Read_Offset) Loading geometry file (OFF/PLY): book.ply Number of vertices: 2853 [Airp_scannerII] Initialize [Airp_scannerII] Initialize Number of polygons: 5722 [Airp_scannerII] Initialize [Airp_scannerII] Initialize sample_scan: Volume[1], material='book.txt' geometry='book.ply' Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry book.ply will be applied! Bounding box dimensions for geometry book.ply: Length=0.239599 (100.000%) Width= 0.029804 (100.000%) Depth= 0.164529 (100.000%) sample_scan: Volume[1], material='book.txt' geometry='book.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/h2o2.dat' (Table_Read_Offset) Loading geometry file (OFF/PLY): h2o2.ply Number of vertices: 406 Number of polygons: 808 Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry h2o2.ply will be applied! Bounding box dimensions for geometry h2o2.ply: Length=0.126295 (100.000%) Width= 0.046911 (100.000%) Depth= 0.090087 (100.000%) sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/H2O.txt' (Table_Read_Offset) Loading geometry file (OFF/PLY): water.ply Number of vertices: 818 sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' Number of polygons: 1632 Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry water.ply will be applied! Bounding box dimensions for geometry water.ply: Length=0.066238 (100.000%) Width= 0.058313 (100.000%) Depth= 0.217547 (100.000%) sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/ethanol.txt' (Table_Read_Offset) Loading geometry file (OFF/PLY): whiskey.ply sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' [Airp_scannerII] Initialize Number of vertices: 616 Number of polygons: 1228 Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry whiskey.ply will be applied! Bounding box dimensions for geometry whiskey.ply: Length=0.082601 (100.000%) Width= 0.076881 (100.000%) Depth= 0.141927 (100.000%) sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' [Airp_scannerII] Initialize Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Cu.txt' (Table_Read_Offset) sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' Loading geometry file (OFF/PLY): wire.ply Number of vertices: 2584 sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' Number of polygons: 5438 [Airp_scannerII] Initialize Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry wire.ply will be applied! Bounding box dimensions for geometry wire.ply: Length=0.173456 (100.000%) Width= 0.078031 (100.000%) Depth= 0.145752 (100.000%) sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' [Airp_scannerII] Initialize Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Al.txt' (Table_Read_Offset) Loading geometry file (OFF/PLY): luggage.off sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' Number of vertices: 37707 sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' Number of polygons: 84521 sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry luggage.off will be applied! Bounding box dimensions for geometry luggage.off: Length=0.324186 (100.000%) Width= 0.260044 (100.000%) Depth= 0.540097 (100.000%) sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' [n-62-29-14:30065] 9 more processes have sent help message help-mpi-btl-openib.txt / ib port not selected [n-62-29-14:30065] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages [n-62-29-14:30065] 9 more processes have sent help message help-mpi-btl-openib.txt / error in device init Trace ETA 2.1825 [h] % 0 Trace ETA 2.1825 [h] % 0 Trace ETA 2.1825 [h] % 0 Trace ETA 2.1825 [h] % 0 Trace ETA 2.08333 [h] % 0 Trace ETA 2.08333 [h] % 0 Trace ETA 2.08333 [h] % 0 Trace ETA 2.08333 [h] % 0 Trace ETA 2.08333 [h] % 0 Trace ETA 2.08333 [h] % 0 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 4 4 4 4 4 4 4 4 4 4 5 5 5 5 5 5 5 5 5 5 6 6 6 6 6 6 6 6 6 6 7 7 7 7 7 7 7 7 7 7 8 8 8 8 8 8 8 8 8 8 9 9 9 9 9 9 9 10 9 10 9 9 10 10 10 10 11 11 10 10 11 10 10 11 11 11 12 12 11 12 12 11 12 12 11 11 13 13 13 13 12 13 13 12 12 12 14 14 14 14 14 14 13 13 13 13 15 15 15 15 15 15 14 14 14 14 16 16 16 16 16 16 15 15 15 15 17 17 17 17 17 17 16 16 16 16 18 18 18 18 18 18 17 17 17 17 19 19 19 19 19 19 18 18 20 18 20 18 20 20 20 20 19 21 21 19 19 19 21 21 21 21 22 22 20 20 22 20 20 22 22 22 23 23 21 23 21 23 21 23 21 23 24 24 24 22 24 22 24 24 22 22 25 25 25 25 23 25 25 23 23 23 26 26 26 26 26 26 24 24 24 24 27 27 27 27 27 27 25 25 25 25 28 28 28 28 28 28 26 26 26 29 26 29 29 29 29 29 27 30 27 30 27 27 30 30 30 30 28 31 31 28 28 28 31 31 31 31 32 29 32 29 29 32 29 32 32 32 33 33 30 30 33 30 30 33 33 33 34 34 31 34 31 31 34 34 31 34 35 35 32 35 35 32 35 32 35 32 36 36 36 33 36 36 33 36 33 33 37 37 37 34 37 37 37 34 34 38 34 38 38 38 38 35 38 35 35 39 39 35 39 39 39 39 36 40 36 40 36 36 40 40 40 40 37 41 41 37 37 37 41 41 41 41 42 38 42 38 38 38 42 42 42 42 43 39 43 39 39 43 39 43 43 43 44 44 40 40 44 40 40 44 44 44 45 45 41 45 41 41 45 45 41 45 46 46 42 46 42 46 42 46 46 42 47 47 43 47 47 43 47 43 47 48 43 48 48 44 48 48 44 49 48 44 49 44 49 45 49 49 50 49 45 45 50 45 50 50 46 50 51 50 51 46 46 46 51 51 51 52 47 51 52 47 47 47 52 52 52 53 52 48 53 48 48 48 53 53 54 53 53 54 49 49 49 54 49 54 55 54 54 55 50 50 50 55 50 55 56 55 55 56 51 56 51 51 56 57 51 56 56 57 52 57 52 52 57 58 57 52 57 58 53 58 58 53 59 53 58 59 58 53 54 59 60 59 54 59 54 60 59 54 60 55 61 60 60 55 61 60 55 55 61 56 62 61 61 62 61 56 56 56 62 63 62 57 62 63 62 57 57 57 63 64 63 58 63 64 63 58 58 64 58 65 64 65 64 59 64 59 59 65 66 59 65 66 65 65 60 60 60 66 67 66 60 67 66 66 61 61 67 68 61 67 61 68 67 67 62 68 69 62 62 68 69 68 62 68 63 69 70 63 69 63 70 69 69 63 64 70 71 70 64 71 64 70 70 64 71 65 72 71 72 65 71 65 71 65 73 72 66 72 73 72 66 72 66 66 73 74 67 73 74 73 73 67 67 74 67 75 74 68 75 74 74 68 68 75 76 68 75 76 69 75 75 69 76 69 77 69 76 77 76 76 70 77 70 78 70 78 70 77 77 77 71 78 79 71 71 78 79 78 71 78 72 79 80 72 72 79 80 79 72 79 80 73 81 80 73 81 73 80 80 81 73 74 82 81 82 74 81 74 81 82 74 83 75 82 83 82 75 83 75 82 75 84 83 76 84 83 84 76 83 76 85 76 84 77 85 84 85 84 77 77 86 85 77 86 78 86 85 85 78 78 87 86 78 87 87 79 86 86 79 87 88 79 88 79 88 87 80 87 88 89 80 80 89 89 80 88 81 88 89 90 81 81 90 90 89 81 89 82 90 91 91 82 91 82 90 82 90 91 83 92 92 92 83 83 91 92 91 83 93 84 93 93 84 92 84 93 92 84 94 85 94 94 93 85 94 85 93 95 85 95 86 95 94 95 86 94 86 96 96 86 87 96 96 95 87 95 87 97 97 87 97 88 97 96 96 88 98 98 88 98 88 89 98 97 97 99 99 89 89 99 99 89 90 98 98 90 90 90 99 91 99 91 91 *** TRACE end *** 91 92 92 92 92 93 93 93 93 94 94 94 94 95 95 95 95 96 96 96 96 97 97 97 97 98 98 98 98 99 99 99 99 Save [Airp_scannerII] Detector: psd0_I=0.00103487 psd0_ERR=1.46354e-07 psd0_N=5e+07 "psd0.dat" Detector: emon_I=0.00103487 emon_ERR=1.46354e-07 emon_N=5e+07 "emon.dat" Detector: psd2_I=0.000643303 psd2_ERR=1.13545e-07 psd2_N=3.82656e+07 "psd2.dat" Finally [Airp_scannerII: 1]. Time: 2.28 [h] Finally [Airp_scannerII: 1]. Time: 2.28 [h] Finally [Airp_scannerII: 1]. Time: 2.28 [h] Detector: psd_far_I=1.17632e-05 psd_far_ERR=1.44371e-08 psd_far_N=1.53234e+06 "psdfar.dat" Finally [Airp_scannerII: 1]. Time: 2.28 [h] Finally [Airp_scannerII: 1]. Time: 2.28 [h] Finally [Airp_scannerII: 1]. Time: 2.28 [h] Finally [Airp_scannerII: 1]. Time: 2.28 [h] Finally [Airp_scannerII: 1]. Time: 2.28 [h] Finally [Airp_scannerII: 1]. Time: 2.28 [h] Finally [Airp_scannerII: 1]. Time: 2.28 [h] INFO: Placing instr file copy /zhome/89/0/38697/xTESTS/2022-05-01/McXtrace_CPU_MPICC_KISS_5e7/Airport_scannerII/Airport_scannerII.instr in dataset 1 loading system configuration loading override configuration from /zhome/89/0/38697/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace_CPU_MPICC_KISS/mccode_config.json