INFO: Using directory: "3" INFO: Using existing c-file: ./Test_Absorption.c INFO: Using existing binary: ./Test_Absorption.out WARNING: Ignoring invalid parameter: "Test_Absorption.instr" INFO: === Simulation 'Test_Absorption' (/home/nexmap/pkwi/xTESTS/2022-05-01/McXtrace-1.x_CPU_MPICC_5e7/Test_Absorption/Test_Absorption.instr): running on 16 nodes (master is 'elearn1.fysik.dtu.dk', MPI version 3.1). [Test_Absorption] Initialize sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' [Test_Absorption] Initialize sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' [Test_Absorption] Initialize sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt [Test_Absorption] Initialize sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' [Test_Absorption] Initialize sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' [Test_Absorption] Initialize sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. [Test_Absorption] Initialize sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' [Test_Absorption] Initialize Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Mn.txt' (Table_Read_Offset) sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt Loading geometry file (OFF/PLY): cube.off Number of vertices: 8 Number of polygons: 6 Warning: Aspect ratio of the geometry cube.off was modified. If you want to keep the original proportions, specifiy only one of the dimensions. Bounding box dimensions for geometry cube.off: Length=0.001000 (0.100%) Width= 0.001000 (0.100%) Depth= 0.000100 (0.010%) sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' [Test_Absorption] Initialize sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. [Test_Absorption] Initialize sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' Trace ETA 29 [s] % 37 Trace ETA 28 [s] % 38 Trace ETA 30 [s] % 35 Trace ETA 27 [s] % 39 Trace ETA 28 [s] % 38 Trace ETA 28 [s] % 38 Trace ETA 29 [s] % 36 Trace ETA 28 [s] % 38 Trace ETA 28 [s] % 38 Trace ETA 28 [s] % 39 Trace ETA 28 [s] % 38 Trace ETA 28 [s] % 37 Trace ETA 29 [s] % 37 Trace ETA 28 [s] % 39 Trace ETA 28 [s] % 38 Trace ETA 28 [s] % 38 40 39 39 39 40 40 39 39 39 39 38 39 38 38 37 36 41 40 41 40 41 40 40 40 40 40 40 39 39 39 38 37 42 42 41 41 41 42 41 41 41 41 41 40 40 40 39 38 43 43 42 43 42 42 42 42 42 42 42 41 41 41 40 39 44 44 43 44 43 43 43 43 43 43 43 42 42 42 41 40 45 45 45 44 44 44 44 44 44 44 44 43 43 43 42 41 46 46 46 45 45 45 45 45 45 45 45 44 44 44 43 42 47 47 47 46 46 46 46 46 46 46 46 45 45 45 44 43 48 48 48 47 47 47 47 47 47 47 47 46 46 46 45 44 49 49 49 48 48 48 48 48 48 48 48 47 47 47 46 50 45 50 50 49 49 49 49 49 49 49 49 48 48 48 47 51 51 46 51 50 50 50 50 50 50 50 50 49 49 49 48 52 52 52 51 51 51 51 47 51 51 51 51 50 50 50 49 53 53 53 52 52 52 52 52 48 52 52 52 51 51 51 54 50 54 54 53 53 53 53 53 53 53 49 53 52 52 52 55 51 55 55 54 54 54 54 54 54 54 50 54 53 53 53 56 52 56 56 55 55 55 55 55 55 55 51 55 54 54 54 57 57 53 57 56 56 56 56 56 56 56 56 52 55 55 58 55 58 54 58 57 57 57 57 57 57 57 57 56 53 59 56 56 59 59 58 55 58 58 58 58 58 58 58 57 60 54 57 57 60 60 59 59 59 59 56 59 59 59 59 58 61 58 55 58 61 61 60 60 60 60 60 57 60 60 60 62 59 59 59 56 62 62 61 61 61 61 61 58 61 61 63 61 60 60 63 60 57 63 62 62 62 62 62 59 62 62 64 62 61 61 64 61 64 58 63 63 63 63 63 63 63 60 65 63 62 62 65 62 65 64 64 64 64 59 64 64 64 61 66 64 63 66 63 63 66 65 65 65 65 65 60 65 65 62 67 65 64 67 64 67 64 66 66 66 66 66 61 66 66 68 63 66 65 68 65 68 67 67 65 67 67 67 67 67 62 69 64 67 66 69 66 69 68 68 68 68 66 68 68 68 70 63 65 68 67 70 70 67 69 69 69 69 67 69 69 69 71 64 66 69 71 68 71 70 70 68 70 70 68 70 70 70 72 65 67 70 72 69 72 71 71 71 69 71 71 69 73 71 71 68 66 71 73 70 73 72 72 72 70 72 72 70 74 72 72 69 74 72 67 71 74 73 73 73 73 71 73 75 71 73 73 75 70 73 68 72 75 74 74 74 74 72 74 76 72 74 74 76 74 71 73 76 69 75 75 75 75 73 75 77 73 75 75 77 75 72 77 74 76 76 76 70 76 78 76 74 76 76 74 78 76 78 73 75 77 77 77 77 71 79 77 75 77 77 75 79 77 79 74 76 78 78 78 78 80 78 72 76 78 78 76 80 78 80 79 79 77 79 75 79 81 79 77 73 79 79 77 81 81 79 80 80 80 78 80 76 82 80 78 80 80 74 78 82 82 80 81 81 81 79 81 83 77 81 79 81 81 75 79 83 83 81 82 82 82 84 82 80 78 82 80 82 82 76 80 84 84 83 83 82 85 83 83 81 83 79 83 83 81 81 77 85 85 84 84 86 83 84 84 82 84 80 84 84 82 86 82 78 86 87 85 85 85 84 85 83 85 81 85 85 83 87 83 79 87 88 86 86 86 85 86 84 86 82 86 86 84 88 84 88 80 89 87 87 87 87 86 85 87 87 87 83 85 89 85 89 90 81 88 88 88 88 87 88 86 88 88 84 86 90 86 90 91 89 89 89 82 89 88 89 87 89 89 85 87 91 87 92 91 90 90 90 90 89 83 90 88 90 90 92 86 88 93 88 92 91 91 91 91 90 84 91 89 91 91 93 89 87 94 93 89 92 92 92 92 91 92 85 90 92 92 94 90 88 95 94 90 93 93 93 93 92 93 91 86 93 93 95 91 89 96 95 94 91 94 94 94 93 94 92 94 87 94 96 92 97 90 96 95 95 92 95 95 94 95 93 95 95 97 88 98 93 97 91 96 96 96 93 96 95 96 94 96 96 98 89 99 94 98 92 Finally [Test_Absorption: 3]. Time: 27 [s] 97 97 97 97 94 97 96 95 97 99 97 90 95 99 98 98 93 98 98 95 98 Finally [Test_Absorption: 3]. Time: 27 [s] 97 96 98 98 91 96 99 99 99 94 99 Finally [Test_Absorption: 3]. Time: 28 [s] 96 99 98 97 99 99 97 92 95 97 99 98 98 93 96 98 Finally [Test_Absorption: 3]. Time: 28 [s] Finally [Test_Absorption: 3]. Time: 28 [s] 99 99 94 97 99 Finally [Test_Absorption: 3]. Time: 29 [s] Finally [Test_Absorption: 3]. Time: 29 [s] 95 98 96 99 Finally [Test_Absorption: 3]. Time: 29 [s] Finally [Test_Absorption: 3]. Time: 29 [s] Finally [Test_Absorption: 3]. Time: 29 [s] Finally [Test_Absorption: 3]. Time: 29 [s] Finally [Test_Absorption: 3]. Time: 29 [s] 97 98 99 Save [Test_Absorption] Detector: emon_I=8.21774e-12 emon_ERR=5.8728e-15 emon_N=5.20462e+06 "emon.dat" Finally [Test_Absorption: 3]. Time: 30 [s] Finally [Test_Absorption: 3]. Time: 30 [s] Finally [Test_Absorption: 3]. Time: 30 [s] Detector: psd_I=8.67468e-09 psd_ERR=1.85411e-12 psd_N=4.39476e+07 "psd.dat" Finally [Test_Absorption: 3]. Time: 30 [s] INFO: Placing instr file copy /home/nexmap/pkwi/xTESTS/2022-05-01/McXtrace-1.x_CPU_MPICC_5e7/Test_Absorption/Test_Absorption.instr in dataset 3 loading system configuration loading override configuration from /home/nexmap/pkwi/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace-1.x_CPU_MPICC/mccode_config.json