INFO: Using directory: "2" INFO: Using existing c-file: ./NBI_Lab_TOMO.c INFO: Using existing binary: ./NBI_Lab_TOMO.out WARNING: Ignoring invalid parameter: "NBI_Lab_TOMO.instr" INFO: === Simulation 'NBI_Lab_TOMO' (/home/nexmap/pkwi/xTESTS/2022-05-01/McXtrace-1.x_CPU_MPICC_5e7/NBI_Lab_TOMO/NBI_Lab_TOMO.instr): running on 16 nodes (master is 'elearn1.fysik.dtu.dk', MPI version 3.1). [NBI_Lab_TOMO] Initialize [NBI_Lab_TOMO] Initialize [NBI_Lab_TOMO] Initialize [NBI_Lab_TOMO] Initialize [NBI_Lab_TOMO] Initialize [NBI_Lab_TOMO] Initialize [NBI_Lab_TOMO] Initialize [NBI_Lab_TOMO] Initialize [NBI_Lab_TOMO] Initialize [NBI_Lab_TOMO] Initialize [NBI_Lab_TOMO] Initialize [NBI_Lab_TOMO] Initialize [NBI_Lab_TOMO] Initialize [NBI_Lab_TOMO] Initialize [NBI_Lab_TOMO] Initialize Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/spectrumU50_th5.dat' (Table_Read_Offset) [NBI_Lab_TOMO] Initialize Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Be.txt' (Table_Read_Offset) Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. filter_Be: Rebinning material data (Be.txt) for faster tracing...done filter_Be: Rebinning material data (Be.txt) for faster tracing...done filter_Be: Rebinning material data (Be.txt) for faster tracing...done filter_Be: Rebinning material data (Be.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. filter_Be: Rebinning material data (Be.txt) for faster tracing...done filter_Be: Rebinning material data (Be.txt) for faster tracing...done filter_Be: Rebinning material data (Be.txt) for faster tracing...done filter_Be: Rebinning material data (Be.txt) for faster tracing...done filter_Be: Rebinning material data (Be.txt) for faster tracing...done filter_Be: Rebinning material data (Be.txt) for faster tracing...done filter_Be: Rebinning material data (Be.txt) for faster tracing...done filter_Be: Rebinning material data (Be.txt) for faster tracing...done Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Al.txt' (Table_Read_Offset) filter_Be: Rebinning material data (Be.txt) for faster tracing...done filter_Be: Rebinning material data (Be.txt) for faster tracing...done filter_Be: Rebinning material data (Be.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. filter_Be: Rebinning material data (Be.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. filterAl: Rebinning material data (Al.txt) for faster tracing...done filterAl: Rebinning material data (Al.txt) for faster tracing...done filterAl: Rebinning material data (Al.txt) for faster tracing...done filterAl: Rebinning material data (Al.txt) for faster tracing...done filterAl: Rebinning material data (Al.txt) for faster tracing...done filterAl: Rebinning material data (Al.txt) for faster tracing...done filterAl: Rebinning material data (Al.txt) for faster tracing...done filterAl: Rebinning material data (Al.txt) for faster tracing...done filterAl: Rebinning material data (Al.txt) for faster tracing...done filterAl: Rebinning material data (Al.txt) for faster tracing...done filterAl: Rebinning material data (Al.txt) for faster tracing...done filterAl: Rebinning material data (Al.txt) for faster tracing...done filterAl: Rebinning material data (Al.txt) for faster tracing...done Loading geometry file (OFF/PLY): king.off Number of vertices: 7192 filterAl: Rebinning material data (Al.txt) for faster tracing...done filterAl: Rebinning material data (Al.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. filterAl: Rebinning material data (Al.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. Number of polygons: 14380 Warning: Aspect ratio of the geometry king.off was modified. If you want to keep the original proportions, specifiy only one of the dimensions. Bounding box dimensions for geometry king.off: Length=0.015000 (0.047%) Width= 0.015000 (0.047%) Depth= 0.015000 (0.024%) Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Glass.dat' (Table_Read_Offset) king: Rebinning material data (Glass.dat) for faster tracing...done king: Rebinning material data (Glass.dat) for faster tracing...done king: Rebinning material data (Glass.dat) for faster tracing...done king: Rebinning material data (Glass.dat) for faster tracing...done king: Rebinning material data (Glass.dat) for faster tracing...done king: Rebinning material data (Glass.dat) for faster tracing...done king: Rebinning material data (Glass.dat) for faster tracing...done king: Rebinning material data (Glass.dat) for faster tracing...done king: Rebinning material data (Glass.dat) for faster tracing...done Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/FilterAir_1mm.dat' (Table_Read_Offset) king: Rebinning material data (Glass.dat) for faster tracing...done king: Rebinning material data (Glass.dat) for faster tracing...done king: Rebinning material data (Glass.dat) for faster tracing...done king: Rebinning material data (Glass.dat) for faster tracing...done king: Rebinning material data (Glass.dat) for faster tracing...done king: Rebinning material data (Glass.dat) for faster tracing...done filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done filter_Al: Rebinning material data (Al.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done filter_Al: Rebinning material data (Al.txt) for faster tracing...done filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done filter_Al: Rebinning material data (Al.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. filter_Al: Rebinning material data (Al.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done filter_Al: Rebinning material data (Al.txt) for faster tracing...done filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. filter_Al: Rebinning material data (Al.txt) for faster tracing...done Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Si.txt' (Table_Read_Offset) filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done filter_Al: Rebinning material data (Al.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. filter_Al: Rebinning material data (Al.txt) for faster tracing...done filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done filter_Al: Rebinning material data (Al.txt) for faster tracing...done filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done filter_Al: Rebinning material data (Al.txt) for faster tracing...done filter_Al: Rebinning material data (Al.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done filter_Al: Rebinning material data (Al.txt) for faster tracing...done filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. filter_Al: Rebinning material data (Al.txt) for faster tracing...done filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done filter_Al: Rebinning material data (Al.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. king: Rebinning material data (Glass.dat) for faster tracing...done filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done filter_Al: Rebinning material data (Al.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done filter_Al: Rebinning material data (Al.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. Trace ETA 6.01667 [min] % 3 Trace ETA 6.01667 [min] % 3 Trace ETA 5.9 [min] % 3 Trace ETA 6.01667 [min] % 3 Trace ETA 6.01667 [min] % 3 Trace ETA 6.01667 [min] % 3 Trace ETA 5.96667 [min] % 3 Trace ETA 5.96667 [min] % 3 Trace ETA 5.96667 [min] % 3 Trace ETA 5.96667 [min] % 3 Trace ETA 5.96667 [min] % 3 Trace ETA 5.96667 [min] % 3 Trace ETA 5.96667 [min] % 3 Trace ETA 5.96667 [min] % 3 Trace ETA 5.96667 [min] % 3 Trace ETA 5.96667 [min] % 3 13 13 13 13 13 13 13 13 13 13 13 13 13 13 13 13 23 23 23 23 23 23 23 23 23 23 23 23 23 23 23 23 33 33 33 33 33 33 33 33 33 33 33 33 33 33 33 33 43 43 43 43 43 43 43 43 43 43 43 43 43 43 43 43 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 63 63 63 63 63 63 63 63 63 63 63 63 63 63 63 63 73 73 73 73 73 73 73 73 73 73 73 73 73 73 73 73 83 83 83 83 83 83 83 83 83 83 83 83 83 83 83 83 93 93 93 93 93 93 93 93 93 93 93 93 93 93 93 93 Finally [NBI_Lab_TOMO: 2]. Time: 5.76667 [min] Finally [NBI_Lab_TOMO: 2]. Time: 5.76667 [min] Finally [NBI_Lab_TOMO: 2]. Time: 5.78333 [min] Finally [NBI_Lab_TOMO: 2]. Time: 5.78333 [min] Finally [NBI_Lab_TOMO: 2]. Time: 5.78333 [min] Finally [NBI_Lab_TOMO: 2]. Time: 5.78333 [min] Finally [NBI_Lab_TOMO: 2]. Time: 5.78333 [min] Finally [NBI_Lab_TOMO: 2]. Time: 5.78333 [min] Finally [NBI_Lab_TOMO: 2]. Time: 5.78333 [min] Finally [NBI_Lab_TOMO: 2]. Time: 5.8 [min] Finally [NBI_Lab_TOMO: 2]. Time: 5.8 [min] Save [NBI_Lab_TOMO] Detector: emon0_I=7.12986e+13 emon0_ERR=2.03448e+10 emon0_N=5e+07 "emon0.dat" Finally [NBI_Lab_TOMO: 2]. Time: 5.81667 [min] Detector: emonef_I=6.6948e+12 emonef_ERR=1.73976e+09 emonef_N=3.16801e+07 "emon0ef.dat" Finally [NBI_Lab_TOMO: 2]. Time: 5.81667 [min] Detector: e_mon1_I=5.02023e+10 e_mon1_ERR=7.74542e+07 e_mon1_N=833985 "emon1.dat" Finally [NBI_Lab_TOMO: 2]. Time: 5.81667 [min] Finally [NBI_Lab_TOMO: 2]. Time: 5.81667 [min] Detector: Detector_Si_I=9.85574e+11 Detector_Si_ERR=2.1716e+08 Detector_Si_N=5e+07 "detector_Si.dat" Detector: e_mon2_I=9.62593e+09 e_mon2_ERR=1.68504e+07 e_mon2_N=820607 "emon2.dat" Finally [NBI_Lab_TOMO: 2]. Time: 5.81667 [min] INFO: Placing instr file copy /home/nexmap/pkwi/xTESTS/2022-05-01/McXtrace-1.x_CPU_MPICC_5e7/NBI_Lab_TOMO/NBI_Lab_TOMO.instr in dataset 2 loading system configuration loading override configuration from /home/nexmap/pkwi/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace-1.x_CPU_MPICC/mccode_config.json