INFO: Using directory: "1" INFO: Using existing c-file: ./NBI_Lab_TOMO.c INFO: Using existing binary: ./NBI_Lab_TOMO.out WARNING: Ignoring invalid parameter: "NBI_Lab_TOMO.instr" INFO: === Simulation 'NBI_Lab_TOMO' (/home/nexmap/pkwi/xTESTS/2022-05-01/McXtrace-1.x_CPU_MPICC_5e7/NBI_Lab_TOMO/NBI_Lab_TOMO.instr): running on 16 nodes (master is 'elearn1.fysik.dtu.dk', MPI version 3.1). [NBI_Lab_TOMO] Initialize [NBI_Lab_TOMO] Initialize [NBI_Lab_TOMO] Initialize [NBI_Lab_TOMO] Initialize [NBI_Lab_TOMO] Initialize [NBI_Lab_TOMO] Initialize [NBI_Lab_TOMO] Initialize [NBI_Lab_TOMO] Initialize [NBI_Lab_TOMO] Initialize [NBI_Lab_TOMO] Initialize [NBI_Lab_TOMO] Initialize [NBI_Lab_TOMO] Initialize [NBI_Lab_TOMO] Initialize [NBI_Lab_TOMO] Initialize [NBI_Lab_TOMO] Initialize [NBI_Lab_TOMO] Initialize Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/spectrumU50_th5.dat' (Table_Read_Offset) Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Be.txt' (Table_Read_Offset) Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] Source_pt(source) Integrated intensity radiated is 1.39838e+14 pht/s Source_pt(source) E0!=0 -> assuming intensity spectrum is parametrized by energy [keV] filter_Be: Rebinning material data (Be.txt) for faster tracing...done filter_Be: Rebinning material data (Be.txt) for faster tracing...done filter_Be: Rebinning material data (Be.txt) for faster tracing...done filter_Be: Rebinning material data (Be.txt) for faster tracing...done filter_Be: Rebinning material data (Be.txt) for faster tracing...done filter_Be: Rebinning material data (Be.txt) for faster tracing...done filter_Be: Rebinning material data (Be.txt) for faster tracing...done filter_Be: Rebinning material data (Be.txt) for faster tracing...done filter_Be: Rebinning material data (Be.txt) for faster tracing...done filter_Be: Rebinning material data (Be.txt) for faster tracing...done filter_Be: Rebinning material data (Be.txt) for faster tracing...done filter_Be: Rebinning material data (Be.txt) for faster tracing...done filter_Be: Rebinning material data (Be.txt) for faster tracing...done filter_Be: Rebinning material data (Be.txt) for faster tracing...done filter_Be: Rebinning material data (Be.txt) for faster tracing...done Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Al.txt' (Table_Read_Offset) WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. filter_Be: Rebinning material data (Be.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. filterAl: Rebinning material data (Al.txt) for faster tracing...done filterAl: Rebinning material data (Al.txt) for faster tracing...done Loading geometry file (OFF/PLY): king.off filterAl: Rebinning material data (Al.txt) for faster tracing...done filterAl: Rebinning material data (Al.txt) for faster tracing...done filterAl: Rebinning material data (Al.txt) for faster tracing...done filterAl: Rebinning material data (Al.txt) for faster tracing...done filterAl: Rebinning material data (Al.txt) for faster tracing...done filterAl: Rebinning material data (Al.txt) for faster tracing...done filterAl: Rebinning material data (Al.txt) for faster tracing...done filterAl: Rebinning material data (Al.txt) for faster tracing...done filterAl: Rebinning material data (Al.txt) for faster tracing...done filterAl: Rebinning material data (Al.txt) for faster tracing...done filterAl: Rebinning material data (Al.txt) for faster tracing...done filterAl: Rebinning material data (Al.txt) for faster tracing...done filterAl: Rebinning material data (Al.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. filterAl: Rebinning material data (Al.txt) for faster tracing...done Number of vertices: 7192 Number of polygons: 14380 Warning: Aspect ratio of the geometry king.off was modified. If you want to keep the original proportions, specifiy only one of the dimensions. Bounding box dimensions for geometry king.off: Length=0.015000 (0.047%) Width= 0.015000 (0.047%) Depth= 0.015000 (0.024%) Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Glass.dat' (Table_Read_Offset) king: Rebinning material data (Glass.dat) for faster tracing...done king: Rebinning material data (Glass.dat) for faster tracing...done king: Rebinning material data (Glass.dat) for faster tracing...done king: Rebinning material data (Glass.dat) for faster tracing...done king: Rebinning material data (Glass.dat) for faster tracing...done king: Rebinning material data (Glass.dat) for faster tracing...done king: Rebinning material data (Glass.dat) for faster tracing...done king: Rebinning material data (Glass.dat) for faster tracing...done king: Rebinning material data (Glass.dat) for faster tracing...done king: Rebinning material data (Glass.dat) for faster tracing...done king: Rebinning material data (Glass.dat) for faster tracing...done Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/FilterAir_1mm.dat' (Table_Read_Offset) king: Rebinning material data (Glass.dat) for faster tracing...done king: Rebinning material data (Glass.dat) for faster tracing...done king: Rebinning material data (Glass.dat) for faster tracing...done king: Rebinning material data (Glass.dat) for faster tracing...done filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done filter_Al: Rebinning material data (Al.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done filter_Al: Rebinning material data (Al.txt) for faster tracing...done filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done filter_Al: Rebinning material data (Al.txt) for faster tracing...done filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done filter_Al: Rebinning material data (Al.txt) for faster tracing...done filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done filter_Al: Rebinning material data (Al.txt) for faster tracing...done filter_Al: Rebinning material data (Al.txt) for faster tracing...done Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Si.txt' (Table_Read_Offset) WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done filter_Al: Rebinning material data (Al.txt) for faster tracing...done filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done filter_Al: Rebinning material data (Al.txt) for faster tracing...done filter_Al: Rebinning material data (Al.txt) for faster tracing...done filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done filter_Al: Rebinning material data (Al.txt) for faster tracing...done filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done filter_Al: Rebinning material data (Al.txt) for faster tracing...done filter_Al: Rebinning material data (Al.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. filter_Al: Rebinning material data (Al.txt) for faster tracing...done filter_Al: Rebinning material data (Al.txt) for faster tracing...done king: Rebinning material data (Glass.dat) for faster tracing...done filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done filter_Al: Rebinning material data (Al.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. filter_air: Rebinning material data (FilterAir_1mm.dat) for faster tracing...done filter_Al: Rebinning material data (Al.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Al.txt would exceed 1M rows. Skipping. Trace ETA 4.4 [min] % 4 Trace ETA 4.46667 [min] % 4 Trace ETA 4.5 [min] % 4 Trace ETA 4.46667 [min] % 4 Trace ETA 4.4 [min] % 4 Trace ETA 4.46667 [min] % 4 Trace ETA 4.4 [min] % 4 Trace ETA 4.43333 [min] % 4 Trace ETA 4.43333 [min] % 4 Trace ETA 4.43333 [min] % 4 Trace ETA 4.43333 [min] % 4 Trace ETA 4.46667 [min] % 4 Trace ETA 4.43333 [min] % 4 Trace ETA 4.43333 [min] % 4 Trace ETA 4.4 [min] % 4 Trace ETA 4.43333 [min] % 4 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 24 24 24 24 24 24 24 24 24 24 24 24 24 24 24 24 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 44 44 44 44 44 44 44 44 44 44 44 44 44 44 44 44 54 54 54 54 54 54 54 54 54 54 54 54 54 54 54 54 64 64 64 64 64 64 64 64 64 64 64 64 64 64 64 64 74 74 74 74 74 74 74 74 74 74 74 74 74 74 74 74 84 84 84 84 84 84 84 84 84 84 84 84 84 84 84 84 94 94 94 94 94 94 94 94 94 94 94 94 94 94 94 94 Finally [NBI_Lab_TOMO: 1]. Time: 4.26667 [min] Finally [NBI_Lab_TOMO: 1]. Time: 4.26667 [min] Finally [NBI_Lab_TOMO: 1]. Time: 4.26667 [min] Finally [NBI_Lab_TOMO: 1]. Time: 4.28333 [min] Finally [NBI_Lab_TOMO: 1]. Time: 4.28333 [min] Finally [NBI_Lab_TOMO: 1]. Time: 4.3 [min] Finally [NBI_Lab_TOMO: 1]. Time: 4.3 [min] Finally [NBI_Lab_TOMO: 1]. Time: 4.3 [min] Save [NBI_Lab_TOMO] Detector: emon0_I=2.42745e+15 emon0_ERR=6.92663e+11 emon0_N=5e+07 "emon0.dat" Finally [NBI_Lab_TOMO: 1]. Time: 4.31667 [min] Detector: emonef_I=2.16901e+14 emonef_ERR=5.77489e+10 emonef_N=3.01639e+07 "emon0ef.dat" Finally [NBI_Lab_TOMO: 1]. Time: 4.31667 [min] Finally [NBI_Lab_TOMO: 1]. Time: 4.31667 [min] Finally [NBI_Lab_TOMO: 1]. Time: 4.31667 [min] Detector: e_mon1_I=3.74956e+12 e_mon1_ERR=6.96663e+09 e_mon1_N=795209 "emon1.dat" Finally [NBI_Lab_TOMO: 1]. Time: 4.31667 [min] Finally [NBI_Lab_TOMO: 1]. Time: 4.31667 [min] Finally [NBI_Lab_TOMO: 1]. Time: 4.31667 [min] Detector: Detector_Si_I=3.88282e+13 Detector_Si_ERR=8.22913e+09 Detector_Si_N=4.9987e+07 "detector_Si.dat" Detector: e_mon2_I=4.63428e+11 e_mon2_ERR=8.39365e+08 e_mon2_N=782525 "emon2.dat" Finally [NBI_Lab_TOMO: 1]. Time: 4.31667 [min] INFO: Placing instr file copy /home/nexmap/pkwi/xTESTS/2022-05-01/McXtrace-1.x_CPU_MPICC_5e7/NBI_Lab_TOMO/NBI_Lab_TOMO.instr in dataset 1 loading system configuration loading override configuration from /home/nexmap/pkwi/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace-1.x_CPU_MPICC/mccode_config.json