INFO: No output directory specified (--dir) INFO: Using directory: "TestSAXS_20220201_001822" INFO: Regenerating c-file: TestSAXS.c DEBUG: CMD: mcxtrace -t -o ./TestSAXS.c /zhome/89/0/38697/xTESTS/2022-02-01/McXtrace_GPU_PGCC_TESLA_KISS_5e7/TestSAXS/TestSAXS.instr Info: 'SAXSSpheres' is a contributed component. Info: 'SAXSShells' is a contributed component. Info: 'SAXSCylinders' is a contributed component. Info: 'SAXSEllipticCylinders' is a contributed component. Info: 'SAXSLiposomes' is a contributed component. Info: 'SAXSNanodiscs' is a contributed component. Info: 'SAXSNanodiscsWithTags' is a contributed component. Info: 'SAXSPDB' is a contributed component. Info: 'SAXSCurve' is a contributed component. Info: 'SAXSNanodiscsFast' is a contributed component. Info: 'SAXSNanodiscsWithTagsFast' is a contributed component. Info: 'SAXSPDBFast' is a contributed component. Info: 'SAXSQMonitor' is a contributed component. CFLAGS= -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL ----------------------------------------------------------- Generating single GPU kernel or single CPU section layout: ----------------------------------------------------------- Generating GPU/CPU -DFUNNEL layout: Component Sample2 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> CPU section from component Sample2 Component Sample3 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> GPU kernel from component Sample4 Component Sample5 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> CPU section from component Sample5 Component Sample6 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. Component Sample7 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> GPU kernel from component Sample8 Component Sample9 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> CPU section from component Sample9 Component Sample10 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. Component Sample11 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> GPU kernel from component Beamstop ----------------------------------------------------------- INFO: Recompiling: ./TestSAXS.out DEBUG: CMD: nvc -o ./TestSAXS.out ./TestSAXS.c -lm -ta:tesla,managed -DOPENACC -I/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL "./TestSAXS.c", line 4094: warning: variable "randstate" was declared but never referenced unsigned long randstate[7]; ^ "./TestSAXS.c", line 4013: warning: variable "newlen" was declared but never referenced long newlen = 0; ^ "./TestSAXS.c", line 5715: warning: variable "ret" was declared but never referenced int ret=1,stat=0,plane_stat=0; ^ "./TestSAXS.c", line 5888: warning: variable "D" was declared but never referenced double A,B,C,D,k; ^ "./TestSAXS.c", line 7954: warning: variable "DummyChar" was declared but never referenced char DummyChar; ^ "./TestSAXS.c", line 7955: warning: variable "Atom" was declared but never referenced char Atom; ^ "./TestSAXS.c", line 8021: warning: variable "Line" was declared but never referenced char Line[256]; ^ "./TestSAXS.c", line 8035: warning: variable "AD" was declared but never referenced const double AD = 1 * 2.82e-13; ^ "./TestSAXS.c", line 9708: warning: variable "tc2" was declared but never referenced Coords tc1, tc2; ^ "./TestSAXS.c", line 9709: warning: variable "tr1" was declared but never referenced Rotation tr1; ^ "./TestSAXS.c", line 10734: warning: variable "status" was set but never used int status=0; ^ "./TestSAXS.c", line 11403: warning: variable "j" was declared but never referenced int i,j; ^ "./TestSAXS.c", line 11936: warning: variable "i" was declared but never referenced int i,j; ^ "./TestSAXS.c", line 11936: warning: variable "j" was declared but never referenced int i,j; ^ "./TestSAXS.c", line 11937: warning: variable "p1" was declared but never referenced double *p1,*p2,*p3; ^ "./TestSAXS.c", line 11937: warning: variable "p2" was declared but never referenced double *p1,*p2,*p3; ^ "./TestSAXS.c", line 11937: warning: variable "p3" was declared but never referenced double *p1,*p2,*p3; ^ "./TestSAXS.c", line 12454: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 12568: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 12684: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 12811: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 12968: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 13121: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 13123: warning: variable "Weight" was declared but never referenced double Weight; ^ "./TestSAXS.c", line 13124: warning: variable "IntensityPart" was declared but never referenced double IntensityPart; ^ "./TestSAXS.c", line 13281: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 13283: warning: variable "Weight" was declared but never referenced double Weight; ^ "./TestSAXS.c", line 13284: warning: variable "IntensityPart" was declared but never referenced double IntensityPart; ^ "./TestSAXS.c", line 13423: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 13426: warning: variable "Weight" was declared but never referenced double Weight; ^ "./TestSAXS.c", line 13427: warning: variable "IntensityPart" was declared but never referenced double IntensityPart; ^ "./TestSAXS.c", line 13438: warning: variable "Slope" was declared but never referenced double Slope; ^ "./TestSAXS.c", line 13439: warning: variable "Offset" was declared but never referenced double Offset; ^ "./TestSAXS.c", line 13549: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 13551: warning: variable "Weight" was declared but never referenced double Weight; ^ "./TestSAXS.c", line 13552: warning: variable "IntensityPart" was declared but never referenced double IntensityPart; ^ "./TestSAXS.c", line 13712: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 13714: warning: variable "Weight" was declared but never referenced double Weight; ^ "./TestSAXS.c", line 13715: warning: variable "IntensityPart" was declared but never referenced double IntensityPart; ^ "./TestSAXS.c", line 13907: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 13909: warning: variable "Weight" was declared but never referenced double Weight; ^ "./TestSAXS.c", line 13910: warning: variable "IntensityPart" was declared but never referenced double IntensityPart; ^ "./TestSAXS.c", line 14076: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 14079: warning: variable "Weight" was declared but never referenced double Weight; ^ "./TestSAXS.c", line 14080: warning: variable "IntensityPart" was declared but never referenced double IntensityPart; ^ "./TestSAXS.c", line 14202: warning: variable "x0" is used before its value is set dl=sqrt((x-x0)*(x-x0)+(y-y0)*(y-y0)+(z-z0)*(z-z0)); ^ "./TestSAXS.c", line 14202: warning: variable "y0" is used before its value is set dl=sqrt((x-x0)*(x-x0)+(y-y0)*(y-y0)+(z-z0)*(z-z0)); ^ "./TestSAXS.c", line 14202: warning: variable "z0" is used before its value is set dl=sqrt((x-x0)*(x-x0)+(y-y0)*(y-y0)+(z-z0)*(z-z0)); ^ "./TestSAXS.c", line 14250: warning: variable "k" was declared but never referenced int i,j,k; ^ "./TestSAXS.c", line 14251: warning: variable "e" was declared but never referenced double e,p2; ^ "./TestSAXS.c", line 16940: warning: variable "t" is used before its value is set mcstartdate = (long)t; /* set start date before parsing options and creating sim file */ ^ "./TestSAXS.c", line 16880: warning: variable "ct" was declared but never referenced clock_t ct; ^ "./TestSAXS.c", line 1235: warning: variable "mcstartdate" was set but never used static long mcstartdate = 0; /* start simulation time */ ^ "./TestSAXS.c", line 2476: warning: function "strcpy_valid" was declared but never referenced static char *strcpy_valid(char *valid, char *original) ^ INFO: === loading system configuration loading override configuration from /zhome/89/0/38697/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace_GPU_PGCC_TESLA_KISS/mccode_config.json