INFO: Using directory: "1" INFO: Using existing c-file: ./MAXII_711.c INFO: Using existing binary: ./MAXII_711.out WARNING: Ignoring invalid parameter: "MAXII_711.instr" INFO: === INFO: Using system default number of mpirun -np processes -------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: n-62-29-18 Local adapter: mlx4_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: n-62-29-18 Local device: mlx4_0 -------------------------------------------------------------------------- Simulation 'MAXII_711' (/zhome/89/0/38697/xTESTS/2022-02-01/McXtrace-1.x_CPU_MPICC_5e7/MAXII_711/MAXII_711.instr): running on 10 nodes (master is 'n-62-29-30', MPI version 3.1). [MAXII_711] Initialize [MAXII_711] Initialize [MAXII_711] Initialize INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_curved.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_curved.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Pt.txt' (Table_Read_Offset) [MAXII_711] Initialize [MAXII_711] Initialize INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_curved.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. [MAXII_711] Initialize Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Si.txt' (Table_Read_Offset) [MAXII_711] Initialize WARNING(sample): p_inc=0, adjusting to 0.01, to avoid algorithm instability WARNING(sample): p_inc=0, adjusting to 0.01, to avoid algorithm instability Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/FormFactors.txt' (Table_Read_Offset) [MAXII_711] Initialize INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_curved.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_curved.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. WARNING(sample): p_inc=0, adjusting to 0.01, to avoid algorithm instability Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/C_diamond.laz' (Table_Read_Offset) Table from file 'C_diamond.laz' (block 1) is 16 x 18 (x=1:6), constant step. interpolation: linear '# TITLE *Diamond-C-[FD3-MS] Fayos, J.[1999];# CELL 3.567000 3.567000 3.5670 ...' PowderN: sample: Reading 16 rows from C_diamond.laz PowderN: sample: Read 16 reflections from file 'C_diamond.laz' PowderN: sample: WARNING: You have requested statistics for incoherent scattering but not set a material datafile ('C.txt') nor defined sigma_inc! Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/C.txt' (Table_Read_Offset) INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_curved.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_curved.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_curved.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. WARNING(sample): p_inc=0, adjusting to 0.01, to avoid algorithm instability WARNING(sample): p_inc=0, adjusting to 0.01, to avoid algorithm instability WARNING(sample): p_inc=0, adjusting to 0.01, to avoid algorithm instability WARNING(sample): p_inc=0, adjusting to 0.01, to avoid algorithm instability WARNING(sample): p_inc=0, adjusting to 0.01, to avoid algorithm instability [MAXII_711] Initialize INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_curved.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. WARNING(sample): p_inc=0, adjusting to 0.01, to avoid algorithm instability [MAXII_711] Initialize INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_curved.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. WARNING(sample): p_inc=0, adjusting to 0.01, to avoid algorithm instability [n-62-29-30:19528] 9 more processes have sent help message help-mpi-btl-openib.txt / ib port not selected [n-62-29-30:19528] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages [n-62-29-30:19528] 9 more processes have sent help message help-mpi-btl-openib.txt / error in device init Trace ETA 31 [s] % 35 Trace ETA 31 [s] % 35 Trace ETA 31 [s] % Trace ETA 31 [s] % 35 35 Trace ETA 31 [s] % 35 Trace ETA 31 [s] % 35 Trace ETA 35 [s] % 31 Trace ETA 35 [s] % 31 Trace ETA 34 [s] % 31 Trace ETA 35 [s] % 31 45 45 45 45 45 45 41 41 41 41 55 55 55 55 55 55 51 51 51 51 65 65 65 65 65 65 61 61 61 61 75 75 75 75 75 75 71 71 71 71 85 85 85 85 85 85 81 81 81 81 95 95 95 95 95 95 Finally [MAXII_711: 1]. Time: 29 [s] Warning: 42049 events were removed in Component[26] bigpsd=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 7868 events were removed in Component[29] detector=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Finally [MAXII_711: 1]. Time: 29 [s] Finally [MAXII_711: 1]. Time: 29 [s] Warning: 42064 events were removed in Component[26] bigpsd=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 7856 events were removed in Component[29] detector=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 42108 events were removed in Component[26] bigpsd=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 7726 events were removed in Component[29] detector=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). 91 91 91 91 Finally [MAXII_711: 1]. Time: 33 [s] Warning: 41821 events were removed in Component[26] bigpsd=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 7853 events were removed in Component[29] detector=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Finally [MAXII_711: 1]. Time: 33 [s] Warning: 41953 events were removed in Component[26] bigpsd=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 7776 events were removed in Component[29] detector=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Finally [MAXII_711: 1]. Time: 33 [s] Warning: 42165 events were removed in Component[26] bigpsd=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 7812 events were removed in Component[29] detector=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Save [MAXII_711] Detector: source_mon_I=2.39041 source_mon_ERR=0.000338363 source_mon_N=4.99685e+07 "source_mon.dat" Detector: mirror_exit_lmon_I=0.00926437 mirror_exit_lmon_ERR=1.31256e-06 mirror_exit_lmon_N=5e+07 "mi_lmon.dat" Detector: mirror_exit_psd_I=0.00904156 mirror_exit_psd_ERR=1.29668e-06 mirror_exit_psd_N=4.87973e+07 "mi_psd.dat" Finally [MAXII_711: 1]. Time: 33 [s] Warning: 41916 events were removed in Component[26] bigpsd=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 7837 events were removed in Component[29] detector=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Detector: mono_exit_lmon_I=5.22103e-06 mono_exit_lmon_ERR=2.6881e-08 mono_exit_lmon_N=2.31678e+07 "me_lmon.dat" Detector: mono_exit_psd_I=5.22011e-06 mono_exit_psd_ERR=2.68782e-08 mono_exit_psd_N=2.31659e+07 "me_psd.dat" Detector: sample_mon_I=2.74039e-07 sample_mon_ERR=6.23153e-09 sample_mon_N=1.17964e+06 "sample_mon.dat" Finally [MAXII_711: 1]. Time: 33 [s] Warning: 41822 events were removed in Component[26] bigpsd=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 7767 events were removed in Component[29] detector=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Detector: psd4pi_I=9.11323e-11 psd4pi_ERR=1.47025e-11 psd4pi_N=773656 "psd4pi.dat" Detector: bigpsd_I=7.81028e-12 bigpsd_ERR=2.64504e-12 bigpsd_N=148907 "bigpsd.dat" Detector: bigradial_I=2.05804e-11 bigradial_ERR=1.10213e-11 bigradial_N=216547 "bigradial.dat" Finally [MAXII_711: 1]. Time: 34 [s] Detector: detector_I=6.95683e-13 detector_ERR=3.01327e-13 detector_N=23025 "psd.dat" Warning: 41893 events were removed in Component[26] bigpsd=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 7767 events were removed in Component[29] detector=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Finally [MAXII_711: 1]. Time: 34 [s] PowderN: sample: Info: you may highly improve the computation efficiency by using SPLIT 15 COMPONENT sample=PowderN(...) in the instrument description /zhome/89/0/38697/xTESTS/2022-02-01/McXtrace-1.x_CPU_MPICC_5e7/MAXII_711/MAXII_711.instr. Warning: 41959 events were removed in Component[26] bigpsd=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 7716 events were removed in Component[29] detector=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). INFO: Placing instr file copy /zhome/89/0/38697/xTESTS/2022-02-01/McXtrace-1.x_CPU_MPICC_5e7/MAXII_711/MAXII_711.instr in dataset 1 loading system configuration loading override configuration from /zhome/89/0/38697/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace-1.x_CPU_MPICC/mccode_config.json